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Re: [Star-fwd-software-l] Issue with loading modules for forward tracking
- From: Gavin Wilks <gwilks3 AT uic.edu>
- To: "Brandenburg, James" <jbrandenburg AT bnl.gov>
- Cc: "star-fwd-software-l AT lists.bnl.gov" <star-fwd-software-l AT lists.bnl.gov>, Te-Chuan Huang <tchuang.phys AT gmail.com>
- Subject: Re: [Star-fwd-software-l] Issue with loading modules for forward tracking
- Date: Wed, 21 Sep 2022 09:18:22 -0500
Hello Daniel,
Dmitri Smirnov helped me solve this issue on Mattermost. I am now able to run tracking.
One of the issues was I was not clearing my loaded modules and this was causing issues. Another issue was that we needed to load another module to properly run root4star.
The environment script was changed to the following:
setup 64b
starver dev
module load star-env-0.2.0-root-5.34.38
module load zlib-1.2.12
Which can be found at /star/u/gwilks3/fst/ForwardTracking/star-sw-1/updatedenv.sh
Best,
Gavin
On Sep 21, 2022, at 02:13, Brandenburg, James <jbrandenburg AT bnl.gov> wrote:Hi Gavin,
Are you still hitting this issue?If so I'll take a look at it today.Did you update your code from fwd-tracking branch or it is a version that worked before?
-Daniel
On Sep 19, 2022, at 10:47 PM, Gavin Wilks <gwilks3 AT uic.edu> wrote:
Hello,
Thank you akio for updating the list on that change to the star-env module.
I am running into a different issue, which has stumped me today. I am trying to use some other genfit utilities for alignment purposes, specifically genfit::MaterialProperties. All of my code compiles, but when I try to run the forward tracking software I receive an error informing me that the symbol corresponding to this class is undefined. I am not sure how to fix this issue as this class should be linked through loading the genfit module. I did not have this issue prior to the updates to the modules.
Command:root4star -l -b -q ./StRoot/StFwdTrackMaker/macro/sim/fwd_tracking.C\(10,\"sim.fzd\",\"./StRoot/StFwdTrackMaker/macro/sim/full_track.xml\”\)
The error is:_______________________________________________dlopen error: /direct/star+u/gwilks3/fst/ForwardTracking/star-sw-1/.sl73_x8664_gcc485/lib/libStFwdTrackMaker.so: undefined symbol: _ZTVN6genfit18MaterialPropertiesELoad Error: Failed to load Dynamic link library /direct/star+u/gwilks3/fst/ForwardTracking/star-sw-1/.sl73_x8664_gcc485/lib/libStFwdTrackMaker.soBFC:FATAL - problem with loading of libStFwdTrackMakerBFC:FATAL - fwdTrack is switched off !!!!root4star: .sl73_x8664_gcc485/obj/StRoot/StBFChain/StBFChain.cxx:177: virtual Int_t StBFChain::Load(): Assertion `libraryload!=kStErr' failed.Abort
If anyone has any insight, it would be greatly appreciated.
Best Regards and Thank you,Gavin
On Sep 16, 2022, at 13:48, Akio Ogawa <akio AT bnl.gov> wrote:
Hello
Following 4 lines without kitrack/genfit module which is now
loaded by star-env:
setup 64b
starver dev
module use /cvmfs/star.sdcc.bnl.gov/star-spack/spack/share/spack/modules/linux-rhel7-x86_64/
module load star-env-0.2.0-root-5.34.38
or
/star/u/akio/fcstrk5/star-sw-1/env.sh
should work.
OGAWA, akio Email : akio AT bnl.gov
BrookHaven National Lab. Physics Dep. 510A 2-235
Upton, NY, 11973-5000 Tel. 631-344-5293
On Sat, 17 Sep 2022, Te-Chuan Huang wrote:
Hi Gavin,
It seems to me that the star-spack repository on cvmfs was updated on Sep. 13 and some of the module name has
been changed.
I think you can try to modify the relevant lines in env.sh as following:
module load star-env-0.2.0-root-5.34.38
module load kitrack-01-10-star-1-root-5.34.38
module load genfit-b496504a-root-5.34.38
I didn’t try to run the codes but I guess it should work.
Cheers,
Te-Chuan
On Sep 17, 2022, at 12:26 AM, Gavin Wilks <gwilks3 AT uic.edu> wrote:
Dear All,
I am currently unable to load the required modules for the forward tracking using the env.sh command.
Has anyone else run into this issue lately?
Command:
source StRoot/StFwdTrackMaker/macro/env.sh
Output:
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'star-env-root-5.34.38'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'kitrack-root-5.34.38'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'genfit-root-5.34.38'
Best Regards,
Gavin
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[Star-fwd-software-l] Issue with loading modules for forward tracking,
Gavin Wilks, 09/16/2022
- <Possible follow-up(s)>
-
[Star-fwd-software-l] Issue with loading modules for forward tracking,
Gavin Wilks, 09/16/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Te-Chuan Huang, 09/16/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Gavin Wilks, 09/16/2022
- Re: [Star-fwd-software-l] Issue with loading modules for forward tracking, Brandenburg, James, 09/16/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Akio Ogawa, 09/16/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Gavin Wilks, 09/19/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Brandenburg, James, 09/21/2022
- Re: [Star-fwd-software-l] Issue with loading modules for forward tracking, Gavin Wilks, 09/21/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Brandenburg, James, 09/21/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Gavin Wilks, 09/19/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Gavin Wilks, 09/16/2022
-
Re: [Star-fwd-software-l] Issue with loading modules for forward tracking,
Te-Chuan Huang, 09/16/2022
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