Atlas-connect-l mailing list

["Dr. Harinder Singh Bawa" <harinder.singh.bawa AT gmail.com>]

Hi Lincoln,

Coming to few issues: I dont understand setup of my account.

1. I see few dir. like public, stash, data but they are physically not dir. for me. It looked to me that they are dir. But whenever I want to copy any file to these dir. or access those dir. it says this is not a dir.

[hbawa@login ~]$ cp simple.* stash/.

cp: target `stash/.' is not a directory

2. Something probably I am missing regarding cvmfs path. I observed when I first time log-in ad submit my jobs, I got my root environment setup. But If I submit it again, my next set of jobs complain of the same cvmfs path issue which I discussed before, I need to log-in again and submit to get root environment. I am using getEnv=True... Could this be the issue? Because I am also getting some path issues. Because, if I submit jobs second time, I cannot see status of condor. Again I need to login again.

sh-4.1$ condor_q

condor_q: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/Gcc/gcc436_x86_64_slc5/slc5/gcc43/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /usr/lib64/condor/libcondor_utils_8_0_4.so)

condor_q: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/Gcc/gcc436_x86_64_slc5/slc5/gcc43/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /usr/lib64/libclassad.so.5)

Any suggestion is appreciated. Strangely, I am successfully running everything in my Fresno T-3. No issues at all.

Harinder

On Mon, Jun 9, 2014 at 11:42 AM, Dr. Harinder Singh Bawa <harinder.singh.bawa AT gmail.com> wrote:

Hi Lincoln,

Strangely, I retried today morning and I am not getting that erorr anymore. Probably,on Friday something was problematic in cvmfs. Now I dont see that problem of cvmfs anymore

Harinder

On Mon, Jun 9, 2014 at 11:32 AM, Dr. Harinder Singh Bawa <harinder.singh.bawa AT gmail.com> wrote:

Hi Lincoln,

Thanks! This is the thing: I am using shell script in which I defiend.

export ATLAS_LOCAL_ROOT_BASE='/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase'

source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh

source ${ATLAS_LOCAL_ROOT_BASE}/packageSetups/atlasLocalROOTSetup.sh --skipConfirm

But why condor is not taking ATLAS_LOCAL_ROOT_BASE path in node (probabaly thats where its taking only /user/atlasLocalSetup.sh) where it is running. Interactively its fine. 

Harinder

On Mon, Jun 9, 2014 at 11:28 AM, Lincoln Bryant <lincolnb AT hep.uchicago.edu> wrote:

Hello Harinder,

Where does this line come from?

+ source /user/atlasLocalSetup.sh

Is this in your job script? 

--Lincoln

On Jun 9, 2014, at 1:25 PM, Dr. Harinder Singh Bawa wrote:

Hello,

Any suggestion to this..Any suggestion is appreciated.

Thanks

Harinder

PS: Is this "atlas-connect-l@lists.bnl.gov" the right forum to ank any problem or for support? Thanks

On Fri, Jun 6, 2014 at 4:50 PM, Dr. Harinder Singh Bawa <harinder.singh.bawa AT gmail.com> wrote:

Hello,

Its strange, I can run my jobs on FresnoState but if I tried on "atlasconnect", the first error I am getting is that I am not able to setup root.

In my shell file, I am setting up root as

export ATLAS_LOCAL_ROOT_BASE='/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase'

source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh

source ${ATLAS_LOCAL_ROOT_BASE}/packageSetups/atlasLocalROOTSetup.sh --skipConfirm

But:

I am getting error like:

****************************************************************************

+ echo 'setup environment'

+ export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase

+ ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase

+ source /user/atlasLocalSetup.sh

/var/lib/condor/execute/dir_24832/condor_exec.exe: line 38: /user/atlasLocalSetup.sh: No such file or directory

+ source /packageSetups/atlasLocalROOTSetup.sh --skipConfirm

/var/lib/condor/execute/dir_24832/condor_exec.exe: line 39: /packageSetups/atlasLocalROOTSetup.sh: No such file or directory

+ echo 'Running on computer'

+ uname -a

+ echo 'Which root?'

+ which root

which: no root in (/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/hbawa/bin)

+ root -b -q

/var/lib/condor/execute/dir_24832/condor_exec.exe: line 46: root: command not found

****************************

Do anyone have idea about it? I can setup interactively though.

I also tried:

export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
source $ATLAS_LOCAL_ROOT_BASE/user/atlasLocalSetup.sh
localSetupROOT --skipConfirm

As given in twiki but it doesnt help.

--Harinder

--

Dr. Harinder Singh Bawa

                                          
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Dr. Harinder Singh Bawa

                                          
[web][facebook][youtube][twitter]

--

Dr. Harinder Singh Bawa

                                          
[web][facebook][youtube][twitter]

--

Dr. Harinder Singh Bawa

                                          
[web][facebook][youtube][twitter]