Atlas-connect-l mailing list

[Lincoln Bryant <lincolnb AT hep.uchicago.edu>]

Hi Harinder,

Responses inline

On Jun 9, 2014, at 2:42 PM, Dr. Harinder Singh Bawa wrote:

Hi Lincoln,

Coming to few issues: I dont understand setup of my account.

1. I see few dir. like public, stash, data but they are physically not dir. for me. It looked to me that they are dir. But whenever I want to copy any file to these dir. or access those dir. it says this is not a dir.

[hbawa@login ~]$ cp simple.* stash/.

cp: target `stash/.' is not a directory

I think, but I don't recall off-hand, that "stash" should not be mounted for ATLAS Connect users. The area you want to use is "faxbox" in your home directory. 

I'll doublecheck with David regarding "stash" "public" etc. 

2. Something probably I am missing regarding cvmfs path. I observed when I first time log-in ad submit my jobs, I got my root environment setup. But If I submit it again, my next set of jobs complain of the same cvmfs path issue which I discussed before, I need to log-in again and submit to get root environment. I am using getEnv=True... Could this be the issue? Because I am also getting some path issues. Because, if I submit jobs second time, I cannot see status of condor. Again I need to login again.

sh-4.1$ condor_q

condor_q: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/Gcc/gcc436_x86_64_slc5/slc5/gcc43/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /usr/lib64/condor/libcondor_utils_8_0_4.so)

condor_q: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/Gcc/gcc436_x86_64_slc5/slc5/gcc43/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /usr/lib64/libclassad.so.5)

Any suggestion is appreciated. Strangely, I am successfully running everything in my Fresno T-3. No issues at all.

These paths look like an SL5 ALRB setup to me. Are you setting something up with SL5 or SLC5 particularly specified?

Harinder

On Mon, Jun 9, 2014 at 11:42 AM, Dr. Harinder Singh Bawa <harinder.singh.bawa AT gmail.com> wrote:

Hi Lincoln,

Strangely, I retried today morning and I am not getting that erorr anymore. Probably,on Friday something was problematic in cvmfs. Now I dont see that problem of cvmfs anymore

Harinder

On Mon, Jun 9, 2014 at 11:32 AM, Dr. Harinder Singh Bawa <harinder.singh.bawa AT gmail.com> wrote:

Hi Lincoln,

Thanks! This is the thing: I am using shell script in which I defiend.

export ATLAS_LOCAL_ROOT_BASE='/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase'

source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh

source ${ATLAS_LOCAL_ROOT_BASE}/packageSetups/atlasLocalROOTSetup.sh --skipConfirm

But why condor is not taking ATLAS_LOCAL_ROOT_BASE path in node (probabaly thats where its taking only /user/atlasLocalSetup.sh) where it is running. Interactively its fine. 

Harinder

On Mon, Jun 9, 2014 at 11:28 AM, Lincoln Bryant <lincolnb AT hep.uchicago.edu> wrote:

Hello Harinder,

Where does this line come from?

+ source /user/atlasLocalSetup.sh

Is this in your job script? 

--Lincoln

On Jun 9, 2014, at 1:25 PM, Dr. Harinder Singh Bawa wrote:

Hello,

Any suggestion to this..Any suggestion is appreciated.

Thanks

Harinder

PS: Is this "atlas-connect-l@lists.bnl.gov" the right forum to ank any problem or for support? Thanks

On Fri, Jun 6, 2014 at 4:50 PM, Dr. Harinder Singh Bawa <harinder.singh.bawa AT gmail.com> wrote:

Hello,

Its strange, I can run my jobs on FresnoState but if I tried on "atlasconnect", the first error I am getting is that I am not able to setup root.

In my shell file, I am setting up root as

export ATLAS_LOCAL_ROOT_BASE='/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase'

source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh

source ${ATLAS_LOCAL_ROOT_BASE}/packageSetups/atlasLocalROOTSetup.sh --skipConfirm

But:

I am getting error like:

****************************************************************************

+ echo 'setup environment'

+ export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase

+ ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase

+ source /user/atlasLocalSetup.sh

/var/lib/condor/execute/dir_24832/condor_exec.exe: line 38: /user/atlasLocalSetup.sh: No such file or directory

+ source /packageSetups/atlasLocalROOTSetup.sh --skipConfirm

/var/lib/condor/execute/dir_24832/condor_exec.exe: line 39: /packageSetups/atlasLocalROOTSetup.sh: No such file or directory

+ echo 'Running on computer'

+ uname -a

+ echo 'Which root?'

+ which root

which: no root in (/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/hbawa/bin)

+ root -b -q

/var/lib/condor/execute/dir_24832/condor_exec.exe: line 46: root: command not found

****************************

Do anyone have idea about it? I can setup interactively though.

I also tried:

export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase
source $ATLAS_LOCAL_ROOT_BASE/user/atlasLocalSetup.sh
localSetupROOT --skipConfirm

As given in twiki but it doesnt help.

--Harinder

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Dr. Harinder Singh Bawa

                                          
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Dr. Harinder Singh Bawa

                                          
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Dr. Harinder Singh Bawa

                                          
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Dr. Harinder Singh Bawa

                                          
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